How to compare and visualize own data with other cBioportal based studies?

Question

[Thind amarinder]

How I can compare my own data with data available in cBioportal and make oncoprint from combined studies. I don't want to make my data public at the moment.

[ATpoint]

And what is your data?

[Thind amarinder]

It is Mutations and cnv data. I am mainly interested in Oncoprint .

Answer 1

[GenoMax]

If you don't want to make your data public then you could download and install a local copy of cBioPortal. If you are an academic user then you could use option 2 on the page linked (we host data for you) to contact cBioPortal to host your data.

[Thind amarinder]

Thanks for your valuable reply. I am wondering, using the local cBioportal If, I can use data from other studies available at online version?

[GenoMax]

As in having a local copy federate data from cBioPortal? I would not think so. Local install only includes the source code for cBioPortal, not the underlying data.

[Thind amarinder]

Thanks, cBioportal informed me that I have to make my data public for using the online version. So maybe I should explore, how I can use download and data of other studies in the local version. I am not sure, if it is possible.