How to find a RNA RNA Intraction dataset for classification task?

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4.5 years ago

M • 0

I want to test a classification algorithm. I need a dataset with both positive tags and negative ones. actually I want to get two RNA seq as input and have a tag that if they are intractable or not. Is anyone there to help me about finding a dataset?

RNA-Seq • 930 views

ADD COMMENT • link 4.5 years ago by M • 0

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What kind of RNA-RNA interactions? Would bacterial sRNAs be interesting?

ADD REPLY • link 4.5 years ago by Asaf 10k

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Yes of course, there is no difference.

ADD REPLY • link 4.5 years ago by M • 0

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I can direct you to my papers: https://www.sciencedirect.com/science/article/pii/S1097276516304130 There's a table in the supplementry. There isn't a good database of bacterial sRNA interactions but I heard it's in the making. You can also check out CLASH results for miRNA but there is a lot of involvement of the Ago protein, there's always a protein involved but I think that in miRNA it's really essential

ADD REPLY • link 4.5 years ago by Asaf 10k

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