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4.5 years ago
krishdb38
•
0
Hello all,
I have 60 samples of Whole Genome Sequence (BAM, VCF ) File. Now I want to do SNP analysis ( I am trying to find some positions which differ among case and Control ).
I did with Python and Found some Positions based on 70 % different among Case and Control.
While I googled I found many Researchers are using plink and other tools for linear ( Logistic ) Regression and finding p values.
if anybody has Notes, information, or links regarding file to Plink regression please share.
I also watched some Youtube Videos but still which is insufficient.
I have attached some of my data screenshots.
1. Sample of Merged 60 VCF File
2. sample of the single VCF file.
Thank You all
