GEO raw data download

Question

[kwanghoon]

Hi

I'm trying to download Supplementary file(GSE109381_RAW.tar) at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109381

I clicked "http" link, but it will take 2 days...

Is there any other way to download this?(in R, python something)

Thank you.

Answer 1

[Kevin Blighe]

You must have low bandwidth, for whatever reason(s). I am not sure there is a quicker way. You could try to contact the authors to see if they will provide you with a prepared normalised matrix of Beta or M methylation values.

Kevin

[kwanghoon]

Thank you again Kevin!

I downloaded raw files using R package 'GEOquery' using getGEOSuppFiles() command. (Also takes some time, but faster than download link :) )

And As you recommended, I found beta value and detection p-value :)

Thank you!