Hi So we got some PacBio data and we want to perform de novo genome assembly using HGAP on a cluster. I'm now trying to understand how to install and run the tool. So, I downloaded SMRT Link v 8.0 from https://www.pacb.com/support/software-downloads/. Next, I think I'm not going to be able to use the graphical interface on the cluster, so according to https://www.pacb.com/wp-content/uploads/SMRT-Link-Software-Installation-v8.0.pdf I installed only SMRT Tools with: smrtlink-*.run --rootdir smrtlink --smrttools-only
I think everything run properly with no errors. But from this point, I have many doubts on how to continue or execute HGAP. Where is the executable? How can I run the tool from the command-line? Everything I'm finding is through the graphical interface
Hope someone have any advice, thanks!
