Entering edit mode
4.9 years ago
Cecelia
▴
30
I have a list of Fst calculations (Weir & Cockerham'S Fst Estimator) based on sliding window (window size 20k, window step 10k) that looks like this:
> scaffold start end sites Fst
> scaffold1 10001 20000 522 0.3793
> scaffold1 20001 30000 744 0.3666
> scaffold1 30001 40000 260 0.3221
> scaffold2 10001 20000 124 0.0123
> scaffold2 20001 30000 322 0.0185
> scaffold3 10001 20000 223 0.0222
I had a hard time understanding how to calculate the weighed Fst based on the sliding window counts. Any help will be much appreciated.