ICGC mRNA sequencing data: where is the documentation on analysis

ICGC mRNA sequencing data: where is the documentation on analysis_id?

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4.4 years ago

mk ▴ 300

If you check the release file "gene_expression" for e.g. PACA-CA (pancreatic carcinoma, Canada), there is a column "analysis_id". In this case the value is [PACA-CA_RNA0, PACA-CA_WTS]. Is there documentation anywhere that explains what this indicator means?

icgc RNA-Seq • 992 views

ADD COMMENT • link 4.4 years ago by mk ▴ 300

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I would contact the DCC or OICR directly. If possible, please provide the answer here when you hear back [from them]. It looks like it just refers to the type of analysis conducted, though. WTS would be 'whole transcriptome sequencing'.

ADD REPLY • link 4.4 years ago by Kevin Blighe 88k

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Thanks, Kevin I have emailed support. They are swamped due to lock down. Agree regarding the abbreviation, that's how I am proceeding in the mean time.

ADD REPLY • link 4.4 years ago by mk ▴ 300

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Have you got a reply for this yet? I am interested in the same question!

ADD REPLY • link 4.2 years ago by jack.henry ▴ 50

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Me too. Any luck, mk?

ADD REPLY • link 4.2 years ago by Kevin Blighe 88k

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