GO enrichment analysis on my own gene list

Question

[qxu062]

I have a list of genes which I am interested among 5 plant genomes. All of these genes are grouped to Gene Families based on gene pairwise comparison score( similarity score). the format is

 #geneName       chr       GeneFamily_ID      start     end     genome_ID
...

I want to do GO enrichment analysis on that to get GO terms but I do not know how to create the input file for the GO analysis. besides some genomes is not in the standard model.

I plan to use the goatool from https://github.com/tanghaibao/goatools

I am totally new to use that so if you could give me any suggestion, I am appreciated

[Thind amarinder]

you can use https://biit.cs.ut.ee/gprofiler/ or Cytoscape based CLuego AAP.

Answer 1

[Antonio R. Franco]

Try this web service http://plantregmap.cbi.pku.edu.cn/go.php. It contains many databases for GO enrichment analysis.

You only need to select your specie and include the name of the genes to analyze. You can also download the databases