reorder contigs into scaffold?

Question

[mrj]

I have N100 contigs (300 of them). How can I order them to a reference genome? What tool should I use? I will be thankful to you if you can answer to those questions.

Answer 1

[young_bioinformatician]

What kind of organism ? Please, give more information. However, There are some tools to make it.

Contiguator ABACAS Mauve

If it is bacteria, the article, Approaches for in silico finishing of microbial genome sequences, can give you some ideas

[mrj]

This is a fungi. I was able to use Mauve. It worked fine. Thanks!