Pathway and gene analysis based on GWAS results

Question

[mel22]

Hello Do you have any advices about performing a pathway analysis or gene analyses based on GWAS results ? Is there any newer methods other than Vegas and Magenta (based on Grch37) because my data is Grch38. Thank you very much

Answer 1

[Sam]

You can try out MAGMA, which is one of the most popular tool for pathway analysis on GWAS results

[mel22]

Thank you very much Sam I will try this

[Friyunnwoo]

any better method come out compared with "magma"?

[mel22]

Hi Friyunnwoo, The best analysis tools are not free, MAGMA still a good choice ...