How to get gene and microRNA expression profiles for specific type of cancers from The Cancer Genome Atlas (TCGA)?

Question

[ahmedmelmoselhy]

How to get the data of gene expression profiles and miRNA expression profiles for Breast Cancer and Colon Cancer from The Cancer Genome Atlas (TCGA) (TCGA data portal)

Thanks in advance.

[fernardo]

Maybe you can also use available R packages that retrieve those data e.g. "TCGAretriever"

Answer 1

[patelk26]

You can try using UCSC treehouse data public data (link to data). It has gene expression data for various tumor types from publicly available repositories, which includes TCGA.