Is it possible to determine if cells are clustered by samples and not by cell types?
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4.5 years ago
singcell • 0

I am analyzing single-cell RNA-Seq data from 10x platform using Seurat.

I have couple of questions:

1) Is it possible to determine if cells are clustered by samples and not by cell types. Which tool can I use for this analysis?

2) If there is any simple tool available to remove this effect.

Thank you.

single-cell RNA-Seq Seurat Sample variation • 749 views
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This previous discussion would be helpful: about batch correction in scRNA-seq

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