ROSE Algorithm for Ranking Super Enhancers

Question

[mropri]

I am trying to run ROSE after I have gotten my peak files and converted them to gff. I tried to use ROSE and it seemed ROSE_main.py failed to call ROSE_bamToGFF.py, with the following message: sh: ROSE_bamToGFF.py: command not found I called ROSE_main.py in the same folder that does contain ROSE_bamToGFF.py and I do not understand why this error occurred. BTW, I was able to call ROSE_bamToGFF.py by python ROSE_bamToGFF.py. Any help is appreciated.

[ATpoint]

The folder is not in PATH. https://opensource.com/article/17/6/set-path-linux

[Tom]

you may try to type ./ROSE_main.py

Good luck