predict miRNA-lncRNA interaction based on lncRNA sequence

Question

[robinycfang]

Hi,

I have a bunch of novel lncRNA sequence and would like to find which annotated miRNA can bind to these novel lncRNA. I have searched for tools to predict miRNA-lncRNA interaction, but it seems like they are all based on known lncRNA. I am wondering if there is a tool existing that can be used to predict target miRNA solely based on novel lncRNA sequence?

Thanks!

Robin

Answer 1

[cagdas]

http://www.cuilab.cn/lnctar

https://cm.jefferson.edu/rna22/Interactive/