Entering edit mode
4.4 years ago
brismiller
▴
60
Hey all,
I am using Bedtools summary program to do some quick quality control steps on some bed files that I have generated. I have looked for the man page for this program but I cannot find it. I am trying to understand what each of the columns in the output means. Is there a man page somewhere obvious that I am just not finding?
Any help would be appreciated,
Here is some example output:
chrom num_records total_bp chrom_frac_genome frac_all_ivls frac_all_bp min max mean
1 3286228 9027084 0.07738 0.077 0.077 1 277 2.747
2 3616547 9811600 0.07528 0.084 0.084 1 220 2.713
3 3035268 8212565 0.06163 0.071 0.070 1 152 2.706
4 2912189 7962848 0.05912 0.068 0.068 1 213 2.734
5 2705117 7333817 0.05642 0.063 0.063 1 193 2.711
6 2602636 7250330 0.05309 0.061 0.062 1 163 2.786
7 2352619 6513613 0.04953 0.055 0.056 1 186 2.769
8 2356976 6090477 0.04511 0.055 0.052 1 164 2.584
I am mainly asking about these specific columns (chrom_frac_genome frac_all_ivls frac_all_bp min max mean)
What is this program ? Can you add a link ? like a download page or something ?