summury control quality assembly the all genome sequencing

Question

[AbdelAbdel]

At bioinformatics college,

I've assembled 145 genomes and I wanted to know about the different contigs quality control parameters. How can I get a tabular report of all genomes at once (Tab or csv). I know QUAST and Assembly-Stat, BBmap.but it gives a file for each genome.

Thanks to community. Best regards.

Answer 1

[Istvan Albert]

MultiQC can parse the output of several different tools and collate them into one report

https://multiqc.info/