Remove reads where quality score length does not equal sequence length
0
0
Entering edit mode
4.4 years ago
elisobel • 0

Hello,

I was wondering if there's a way to remove reads from a SAM/BAM file in which the length of the quality score column does not equal the length of the sequence column.

Thank you, Eli

alignment SAM trimming sequence quality score • 921 views
ADD COMMENT
0
Entering edit mode

Can you post one of such record? This sounds strange.

ADD REPLY
0
Entering edit mode

Generally, this should not happen, please check the software logs.

ADD REPLY

Login before adding your answer.

Traffic: 1746 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6