Remove reads where quality score length does not equal sequence length
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4.3 years ago
elisobel • 0

Hello,

I was wondering if there's a way to remove reads from a SAM/BAM file in which the length of the quality score column does not equal the length of the sequence column.

Thank you, Eli

alignment SAM trimming sequence quality score • 917 views
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Can you post one of such record? This sounds strange.

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Generally, this should not happen, please check the software logs.

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