How Can I Verify If My Chip-Seq Control/Input Data Is Enough Covered By Sequencing Tags?

Question

[Luke]

Hi Dears, as written in the title, do you know any software/tool to test if my control/input data is sufficiently covered by sequencing and if the distribution of tags is similar to an uniform distribution? Thank you. Best regards, Luke

Answer 1

[Ian]

HOMER (Perl) and htSeqTools (R) are useful tools that may answer you questions, but are certainly good at performing QC on your samples.