Entering edit mode
4.5 years ago
mel22
▴
100
Hello,
As beginner and it's my first imputation, I have few questions about TOPMED imputation server please any one used to this type of imputation server could help : )
- The output of the imputation does it contain typed and untyped SNPs ?
- If yes how to know the typed ones ?
- When a filter based on r2 is used, does it deleted the typed SNP from the VCF as they don't have an r2 value ?
Thank you very much !
1- The output of the imputation does it contain typed and untyped SNPs ?
3- When a filter based on r2 is used, does it deleted the typed SNP from the VCF as they don't have an r2 value ?
Thank you very much curious :)