Entering edit mode
4.8 years ago
ancient_learner
▴
680
Hi, Greetings! I have a list of K-mers (Human) like below
AAGTGCG
GGCGGCT
ACGTGGCA
TGCGTGGG
TGGCGTGA
Some of these K-mers may be serving as binding sites for TFs and some may be just the repeats. I want to annotate these K-mers with TFs. Wondering if there is a tool already which helps me get the outcome (without me converting it to fasta format and trying with PWMs) but would provide the Name of the TF
, Accuracy of the site
, The Actual Binding site
Ideally like below
My Input Name of TF Accuaracy Actual Binding
GGCGGGAA E2F3 9.3/10 GGCGGGA