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4.4 years ago
curious
▴
820
I am performing imputation with minimac
I get this result for one field
Genotype : 0|1
Estimated Alternate Allele Dosage [P(0/1)+2*P(1/1)]: 0.929
Estimated Haploid Alternate Allele Dosage: 0.046,0.883
Estimated Posterior Probabilities for Genotypes 0/0, 0/1 and 1/1 0.111,0.848,0.041
I get that the Estimated Alternate Allele Dosage .929 is calculated by (.848 + 2*.041)
I don't get how they calculate haploid alternate allele dosage. Does anyone know?