Free codon optimization tools for ordering DNA?

Question

[mpaco]

I was wondering if there is a free codon optimization tool that can be integrated into code to generate the codon-optimized version of many DNA sequences? In the past I used thermofisher's built in tool to do codon optimization. However, that process has to be done one by one for each DNA sequence that you want to optimize.

~ Cheers

[Joe]

If you can get hold of the relevant codon frequency table for your organism of interest, it's quite easy to write some e.g. python code to do this.

Answer 1

[Mensur Dlakic]

The best codon optimization tool I know about is JCat. Unfortunately, the website is down right now, so I am not sure it will be useful to you. A nice online optimizer is here, and it has a python API with similar functionality.

[mpaco]

Thank you! This is helpful.

[mittu1602]

Is there any other similar tool which can be downloaded and installed on linux system?