Question

Python script to download fasta files from ncbi

0

Entering edit mode

4.5 years ago

bioinformatics.queries ▴ 70

Hi

Could anyone share the python script to download fasta sequence from NCBI?

sequence • 5.3k views

ADD COMMENT • link updated 4.5 years ago by GenoMax 148k • written 4.5 years ago by bioinformatics.queries ▴ 70

score 0 · Answer 1 · 2020-07-24

0

Entering edit mode

4.5 years ago

GenoMax 148k

Kai Blin's ncbi-genome-download (LINK). If you need whole genomes.
Otherwise: A: download sequences form ncbi using python

You should also look into Entredirect if you have a lot of accession numbers.

ADD COMMENT • link 4.5 years ago by GenoMax 148k

0

Entering edit mode

Thanx Blin for sharing the link

ADD REPLY • link 4.5 years ago by bioinformatics.queries ▴ 70