Genes With "." in Their Names

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4.3 years ago

drsami ▴ 90

Hello Everyone,

What are Genes having "." in their names from RNA-seq DE analysis, and how can i deal with them.

RNA-Seq • 839 views

ADD COMMENT • link 4.3 years ago by drsami ▴ 90

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.w.e. .n.e.e.d. .a.n. .e.x.a.m.p.l.e

ADD REPLY • link 4.3 years ago by Pierre Lindenbaum 164k

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In my experience, they're RNA polymerase or those starting with the LOC string but as Pierre mentioned above, it's best to provide an example to help you out.

ADD REPLY • link 4.3 years ago by sandeep.amberkar18 ▴ 50

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Please find an example below

geneNames   feature id  fc  pval    qval
767 .   gene    MSTRG.100936    0.260518915 5.27E-05    0.043761259
1563    .   gene    MSTRG.101897    3.442032364 3.00E-05    0.035730884
1987    .   gene    MSTRG.102450    2.52488405  5.80E-05    0.044304183

ADD REPLY • link 4.3 years ago by drsami ▴ 90

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see How to deal with MSTRG tag without relevant gene name?

ADD REPLY • link 4.3 years ago by Pierre Lindenbaum 164k

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Another Example here.

20605   .   gene    MSTRG.27037 0.097882868 5.77E-06    0.015044478
20877   .   gene    MSTRG.27346 0.169828649 5.86E-07    0.006780117
21876   .   gene    MSTRG.28681 0.158596591 5.42E-06    0.015044478
21880   .   gene    MSTRG.28685 0.081917211 2.14E-06    0.009630203
21932   .   gene    MSTRG.28747 0.236740651 5.59E-05    0.043761259
22349   .   gene    MSTRG.29393 4.277193655 6.17E-05    0.046638208
23250   .   gene    MSTRG.30586 2.519706827 1.37E-05    0.023856718
23497   .   gene    MSTRG.30912 0.205885854 3.85E-05    0.039149548

ADD REPLY • link 4.3 years ago by drsami ▴ 90

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