Entering edit mode
4.3 years ago
kl
▴
10
Hello,
How can you replace the column that is CHR:POS:REF:ALT as rsid name using BCFtools for a vcf v4.2 file?
Many thanks
Hello,
How can you replace the column that is CHR:POS:REF:ALT as rsid name using BCFtools for a vcf v4.2 file?
Many thanks
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That's weird task to undertake. a VCF file should have an ID column which you can use to input the rsid.
It does - the ID column is CHR:POS:REF:ALT.
That's very strange! How was the vcf file made (i.e. how were variants called?). Also can you post an example (formatted correctly)?