IDBA-UD Output Question

Question

[cupplesa]

I am concerned that my IDBA-UD run had problems. Although the output contained a contigs.fa file, there was no scaffold.fa file generated. I changed the constant kMaxShortSequence in src/sequence/short_sequence.h to support my longer read length. Any suggestions would be appreciated, thanks.

[young_bioinformatician]

What is your input ? IDBA gives some contigs.fa files which are depends on k-mer size you entered as input. Also, there sould be one scaffold.fa as output. What is your parameters ? Give more information please