Entering edit mode
12.6 years ago
remanisuja
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30
How to get the contig details from FASTQ files?
How to get the contig details from FASTQ files?
the question is not very clear, but I'll just give it a go.
fastq is a file format only for unmapped reads. if you need contig details then you would have to map those reads first. unless you have fastq files with reads coming only from a particular contig, in which case you would be the only one knowing with contig they've been sequenced from, and I guess that would be the information you need.
if your intention is to submit RNAseq data to SRA, there's a SEQanswers' thread that may be of your interest.
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You should provide more detailed info.~~
I have the transcriptome sequence data in FASTQ file. How can I submit the EST to SRA of NCBI?
What kind of information you want to extract?
your post is still not specific enough - has been moved to the FixMe category. Please edit the main post and describe the problem that you are trying to solve.