mpileup error : Note: none of --samples-file, --ploidy or --ploidy-file given, assuming all sites are diploid

Question

[sami]

mpileup return==>Note: none of --samples-file, --ploidy or --ploidy-file given, assuming all sites are diploid

I work on bacteria ,

what should i do in this case ???

thanks

Answer 1

[gb]

With not much more context the answer now is giving --ploidy 1 to your command.

[sami]

I work on mycobacterium tuberculosis complex .

thank you . i ll try --ploidy 1