Question

hsmetrics on_target_bases and on_baits_bases calculation

1

Entering edit mode

4.3 years ago

bitpir ▴ 250

Hi there,

I was wondering if anyone knows of the formula used for HSmetrics' ON_BAIT_BASES and ON_TARGET_BASES. I did a quick run using the HSmetrics tool, while inputing the same bed file for both bait and target intervals. The results show that ON_BAIT_BASES and ON_TARGET_BASES are different even though the bedfiles are the same. Does anyone know why this is the case?

Thanks for the help!

hsmetrics hybridization selection • 1.2k views

ADD COMMENT • link updated 4.2 years ago by parvathi.sudha ▴ 40 • written 4.3 years ago by bitpir ▴ 250

score 1 · Answer 1 · 2020-08-27

1

Entering edit mode

4.2 years ago

parvathi.sudha ▴ 40

Hope, this will be helpful!

https://github.com/broadinstitute/picard/issues/476

ADD COMMENT • link 4.2 years ago by parvathi.sudha ▴ 40