Question

BGI sequencer and his output

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4.5 years ago

L_LANKA • 0

Good day! In the future, I will work with BGI sequencer. I have some question about this technology:

1) What type of output file we have after work? In Internet I looked that this fasta but I have some doubts.

2) Can I download files made from this sequencer from internet? I would like construct pipeline before I have file from laboratory.

Thank you so much for your answers :)

sequence • 1.7k views

ADD COMMENT • link updated 4.5 years ago by wulj2 ▴ 50 • written 4.5 years ago by L_LANKA • 0

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You'll get fastq format.

ADD REPLY • link 4.5 years ago by WouterDeCoster 47k

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https://www.bgi.com/global/resources/sequencing-platforms/ this might be helpful

ADD REPLY • link 4.5 years ago by wulj2 ▴ 50

score 1 · Answer 1 · 2020-08-11

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4.5 years ago

GenoMax 149k

Search for BGISEQ using sra-explorer (LINK). There are not that many sequences in public databases. These sequencers are prevalent in China but not widely installed outside asia.

ADD COMMENT • link 4.5 years ago by GenoMax 149k

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Thank you so much! It's so useful.

ADD REPLY • link 4.5 years ago by L_LANKA • 0

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also query for DNBseq , still haven't figured out exactly what the difference is but we are offered always this one in stead of the BGIseq .

ADD REPLY • link 4.5 years ago by lieven.sterck 15k