Question

How to visualize skipped exon?

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4.3 years ago

tanya_fiskur ▴ 70

Hello!

I have two transcripts, and in one of them exon #7 is skipped. I really wish to visualize it. Is there any tool that can help me?

Thank you a lot in advance!

next-gen alternative splicing • 1.2k views

ADD COMMENT • link updated 4.3 years ago by GenoMax 147k • written 4.3 years ago by tanya_fiskur ▴ 70

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What data is this from?

ADD REPLY • link 4.3 years ago by rpolicastro 13k

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It is from killifish n.furzeri

ADD REPLY • link 4.3 years ago by tanya_fiskur ▴ 70

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I meant is this RNA-seq data, ir some other type of NGS data?

ADD REPLY • link 4.3 years ago by rpolicastro 13k

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You should also show an example of the data that you currently have, so that people can better help. Also, it would help to have explained your pipeline / processing steps so far.

ADD REPLY • link 4.3 years ago by Kevin Blighe 88k

score 1 · Answer 1 · 2020-08-13

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4.3 years ago

GenoMax 147k

You should be able to view this using Sashimi plots in IGV.

ADD COMMENT • link 4.3 years ago by GenoMax 147k