Convert ID for Human Gene 1.0 ST Array
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4.3 years ago
Palgrave ▴ 130

Hi, I am looking for a R package to convert IDs for the 1.0 ST array from affymetrix. The IDs have the format below:

7892501

7892501

...

R microarray affymetrix • 2.8k views
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Entering edit mode
4.3 years ago

Some more automated ways I just posted here: C: Why bioMart query results in a low coverage of annotations

probeIDs

require(hugene10sttranscriptcluster.db)
annotLookup <- select(hugene10sttranscriptcluster.db, keys =probeIDs,
  columns = c('PROBEID', 'ENSEMBL', 'SYMBOL'))

require(hugene10stprobeset.db)
annotLookup <- select(hugene10stprobeset.db, keys = probeIDs,
  columns = c('PROBEID', 'ENSEMBL', 'SYMBOL'))
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