julia viva for loking vcf file
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4.3 years ago
ERROR: LoadError: InitError: SystemError: opening file /home/theory/.julia/packages/PlotlyJS/AhkM5/deps/build.log: No such file or directory
Stacktrace:
 [1] #systemerror#39(::Nothing, ::Function, ::String, ::Bool) at ./error.jl:106
 [2] systemerror at ./error.jl:106 [inlined]
 [3] #open#295(::Nothing, ::Nothing, ::Nothing, ::Nothing, ::Nothing, ::Function, ::String) at ./iostream.jl:283
 [4] open at ./iostream.jl:275 [inlined]
 [5] #open#296(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::getfield(Base, Symbol("##260#261")){String}, ::String) at ./iostream.jl:367
 [6] open at ./iostream.jl:367 [inlined]
 [7] read at ./io.jl:297 [inlined]
 [8] __init__() at /home/theory/.julia/packages/PlotlyJS/AhkM5/src/PlotlyJS.jl:84
 [9] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:633
 [10] _require_search_from_serialized(::Base.PkgId, ::String) at ./loading.jl:713
 [11] _require(::Base.PkgId) at ./loading.jl:937
 [12] require(::Base.PkgId) at ./loading.jl:858
 [13] require(::Module, ::Symbol) at ./loading.jl:853
 [14] include at ./boot.jl:317 [inlined]
 [15] include_relative(::Module, ::String) at ./loading.jl:1044
 [16] include(::Module, ::String) at ./sysimg.jl:29
 [17] top-level scope at none:2
 [18] eval at ./boot.jl:319 [inlined]
 [19] eval(::Expr) at ./client.jl:393
 [20] top-level scope at ./none:3
during initialization of module PlotlyJS
in expression starting at /home/theory/.julia/packages/VariantVisualization/1yoNl/src/VariantVisualization.jl:4
ERROR: LoadError: Failed to precompile VariantVisualization [7f8bf45c-0ad5-53b5-97e6-33c1305e0aa4] to /home/theory/.julia/compiled/v1.0/VariantVisualization/v8cR2.ji.
Stacktrace:
 [1] error(::String) at ./error.jl:33
 [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1203
 [3] _require(::Base.PkgId) at ./loading.jl:960
 [4] require(::Base.PkgId) at ./loading.jl:858
 [5] require(::Module, ::Symbol) at ./loading.jl:853
 [6] include at ./boot.jl:317 [inlined]
 [7] include_relative(::Module, ::String) at ./loading.jl:1044
 [8] include(::Module, ::String) at ./sysimg.jl:29
 [9] exec_options(::Base.JLOptions) at ./client.jl:266
 [10] _start() at ./client.jl:425
in expression starting at /home/theory/.julia/packages/VariantVisualization/1yoNl/viva:9
software error • 1.2k views
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Please explain the context of this output.

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I got the vcf file from the software varscan2 and I want to show it in the form of a chart and a statistical table and I used the software viva and it gave me this error. Where is the problem?

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What platform are you running it on? How did you install it? Did it install properly? Give us as much information as you can.

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