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4.3 years ago
yousefifariba6
•
0
Hi, I got the VCF file from the software VARSCAN2 and I want to display it statistically as a graph or a visible plot. What steps should I go through? My file contains 1534 variant positions reported and I realized I had to do the filter first. Am I guessing right? Please share the steps for plot display.
What exactly do you wish to plot? Can you describe what your X and Y axis scales (and your legends) would look like?
Linked thread: julia viva for loking vcf file
That piece of software has no sample visualizations, which is unusual for visualization packages. OP - maybe take a look at this: https://github.com/knausb/vcfR
Should the first vcf file be filtered and then extracted?
Are there multiple VCF files? What are you looking to filter or extract?