Non-coding transcript on NCBI

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4.3 years ago

Sammy ▴ 30

Hey,

I feel like this is an unusual questions but I'm interested in a non-coding RNA that I found on NCBI on the human genome. However I can't find any source (it says gene source: havana) or study about that transcript. I don't know how to talk about it. It's not technically a question but do you have any input on this one?

RNA-Seq gene • 728 views

ADD COMMENT • link 4.3 years ago by Sammy ▴ 30

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Is there a specific lncRNA that you are interested in? GENCODE produces official annotation for Human genome. You can find their non-coding RNA GTF file (along with sequences) at this link.

ADD REPLY • link 4.3 years ago by GenoMax 147k

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Yes, I'm interested in a specific one. Thanks for the link. Found it. Might be a naive questions but where does all this HAVANA data comes from. Haven't found any study that supports the presence of a non-coding RNA in that region.

ADD REPLY • link 4.3 years ago by Sammy ▴ 30

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HAVANA is a manual annotation project at EMBL/EBI. For a few species mentioned here they do a merge of HAVANA and GENCODE/Ensembl annotations.

ADD REPLY • link 4.3 years ago by GenoMax 147k

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