DAVID clustering using R

Question

[user.bioinfo]

A: Clustering of DAVID gene enrichment results from gene expression studies in this tutuorial how can one obtain DAVID enrichment file in .david format ? then is there any specific library required for reading. david file ?

[user.bioinfo]

https://david.ncifcrf.gov/data/download/chart_3D83F1B8E8D91598367405451.txt i am getting a txt file like this for dowanload, how to convert it into .david format ?

[GenoMax]

Please use ADD COMMENT/ADD REPLY when responding to existing posts to keep threads logically organized. This comment should go under @Kevin's answer.

SUBMIT ANSWER is for new answers to original question

Answer 1

[Kevin Blighe]

Hi,

It is derived from the Functional Annotation tool on the DAVID web-site: https://david.ncifcrf.gov/summary.jsp

I suggest that you spend some time going through the steps - there is guidance on the DAVID web-site.

To help, I provide a test file (see step 1: A: Clustering of DAVID gene enrichment results from gene expression studies )

Kevin

[user.bioinfo]

https://david.ncifcrf.gov/data/download/chart_3D83F1B8E8D91598367405451.txt i am getting a txt file like this for dowanload, how to convert it into .david format ?

[Kevin Blighe]

Just rename the file-extension. It can be anything really - you do not have to interpret my tutorial in the literal sense.

[user.bioinfo]

Ok thanks buddy, will try and report back