How to count the paired end reads number in given regions
0
0
Entering edit mode
4.2 years ago
ben.kunfang ▴ 30

Hi,

I have a celltype.bwt2pairs.bam file from HiC-Pro. I would like to count the number of the paired reads in given regions, for example, how many paired read on the region chr1:80426-82426 and its mate on the region chr1:75071-77071.

Thanks in advance,
Kun

paired-end bam Hi-C HiC-Pro • 789 views
ADD COMMENT

Login before adding your answer.

Traffic: 1991 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6