Distinguish sample growth condition in Biosample

Question

[qstefano]

Hi,

I have a series of genes with relative expression values. The next step will be apply Kruskal-Wallis test. First i have to group the values according to growth conditions, so my question is: how can i distinguish wich one is under one condition rather than another? my pipeline is completely automatized, there's a unique attribute wich indicate if the sample is control/treated?

thanks for the attention

[rpolicastro]

Can you provide an example of the data or a link to the source on NCBI?

[JC]

What SRA accession are you analyzing? In general SRA submissions allows adding metadata that you can get by the REST API

[ATpoint]

That having said, there is no standardized way to feed in specific information such as growth information, so you most likely need to scan the metadata manually.