database of ligand->receptor->TF(or transcriptional target)
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Entering edit mode
4.2 years ago
mk ▴ 300

Is there an online database or package-based tool to find interactions where each record has at least:

  1. ligand gene
  2. receptor gene
  3. transcriptional target
  4. direction of regulation [is (4) up or down in response to (1,2)]*

* (4) can just be omitted if (3) is always up in a certain database

Any species is fine (I have fish data), since I can just map the orthologs with biomart.

database signaling • 741 views
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