Ciri run error

Question

[aminijavad4]

Hi I downloaded ciri to find circular RNAs in RNA-seq data. I execute below command:

perl CIRI2.pl -I test.sam -O outfile -F dm6.fa -A drosophilaNCBI.gtf

but I see below error:

Can't open perl script "CIRI2.pl": No such file or directory

I appreciate if anybody share his/her comment with me.

Thanks in advance.

Answer 1

[Ram]

Use the full path to CIRI2.pl like so:

perl /path/to/CIRI2.pl ...

[aminijavad4]

Thanks. but I still get an error

 Can't open perl script "/path/to/CIRI2.plperl": No such file or directory

[Ram]

I hope you did not literally use /path/to/CIRI2.pl. Where is CIRI2.pl located in your file system?

[aminijavad4]

I got it. thank you.