how about 3d-dna
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4.3 years ago
leeunfeng • 0

how about 3d-dna. Especially for highly heterozygous genomes.and,Juicer Tools how to manually correct,

ASSEMBLY sequence • 1.0k views
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Please edit your question and add more detail. I doubt anyone here can understand what you're referring to.

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This questions is badly posed but is about valid tools. See this link for help. You don't say if you have Hi-C data.

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4.2 years ago
Juke34 8.9k

I think ALLHiC will perform better than 3d-dna. See that paper:
Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data
Xingtan Zhang, Shengcheng Zhang, Qian Zhao, Ray Ming & Haibao Tang
Nature Plants volume 5, pages833–845(2019)

I have used it and it really easy to use and to install.

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