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4.2 years ago
cocchi.e89
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290
I am working with some WGS human hg38 tests. I noticed that VEP has as default only gnomAD exomes included, and adding the annotation through dbNSFP only works for SNP (and not INDEL).
I wondered if there is there a way to manually add AF annotation directly from gnomAD database files?
Thank you so much in advance for any help!
Use
bcftools annotate
with the gnomad bgz file as the annotation source.