kegg enrichment and pathway analysis

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4.2 years ago

MEITUO ▴ 10

hi!

I ran eggong-emapper to get the emapper.annotations file, which has the information of KEGG pathway, ko..., but how I can get the metabolism pathway and functional gene enrichment analysis. Is there any tutorial?

gene • 1.2k views

ADD COMMENT • link updated 4.2 years ago by Ram 44k • written 4.2 years ago by MEITUO ▴ 10

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Have you tried DAVID? It does functional gene enrichment analysis and other interesting analysis for you.

EDIT : here you can ask for help specifically about "eggnog-mapper", maybe what you asked has been answered already. In the original comment, I just introduced a widely used web-tools for enrichment analysis.

ADD REPLY • link 4.1 years ago by Hamid Ghaedi 3.3k

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hi!

the input file of DAVID is a gene list, is the gene list in the emapper.annotations file? or how can i get the gene list?

ADD REPLY • link 4.2 years ago by MEITUO ▴ 10

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