Question

What is the format of the input file to the IGV software?

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4.3 years ago

Fahimeh.6868 ▴ 30

Hi everyone I am going to calculate the coverage of mapped data of the ngs analysis. I found igv software. What is the format of the input file to the IGV software? Do I need to index the bam file?

RNA-Seq alignment • 2.4k views

ADD COMMENT • link 4.2 years ago by Fahimeh.6868 ▴ 30

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Nice that you did not even consider to add some more details or to show some minimal effort after your last (identical) question got closed. input file to the igv softwar

ADD REPLY • link 4.3 years ago by ATpoint 86k

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Do I need to index the bam file?

You need to co-ordinate sort and index the BAM file.

ADD REPLY • link 4.2 years ago by GenoMax 148k

score 1 · Answer 1 · 2020-09-21

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4.3 years ago

Pierre Lindenbaum 164k

https://software.broadinstitute.org/software/igv/FileFormats

ADD COMMENT • link 4.3 years ago by Pierre Lindenbaum 164k