RnBeads Greedycut command ???

Question

[Ankit]

Hi everyone,

Is this command from RnBeads R package is correct?

# Remove probes and samples based on a greedy approach
> rnb.set.filtered <- rnb.execute.greedycut(rnb.set.filtered)**$dataset**

I did not get any output matrix. What I am missing

I am nor sure if $dataset is the right one as output does not have this parameter.

Please help.

Thank you

Answer 1

[almsu798]

I also has a problem with this command. The result I got is not RnBeadRawSet object. If I run nrow(meth(rnb.set.filtered)) on the results,I got an error Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'nrow': unable to find an inherited method for function ‘meth’ for signature ‘"list"’

Does anyone knows what is the problem here? Many thanks