RNAseq example data

1

Entering edit mode

4.2 years ago

rakinitopo ▴ 10

Hi!! I'm looking for an example dataset from RNA-seq expression data that have a time variable. I mean, what I need is some data measured over time and across tissues and genes that I could use for functional data analysis and time series. Does anyone know where I might find this kind of datasets? I would also be fine with other types of genomic data (methylation, mrna expression...). Thanks in advance!!!

expression RNA-Seq data next-gen • 729 views

ADD COMMENT • link updated 4.2 years ago by ATpoint 85k • written 4.2 years ago by rakinitopo ▴ 10

3

Entering edit mode

Go to this site. Search with "RNAseq time". You can add/refine search adding terms as needed (e.g. human, mouse etc).

This post describes how to use the tool: C: sra-explorer : find SRA and FastQ download URLs in a couple of clicks

ADD REPLY • link 4.2 years ago by GenoMax 147k

2

Entering edit mode

You could check section 4.8 of the edgeR manual. It contains both links to preprocessed time-course data and also example code and background information.

ADD REPLY • link 4.2 years ago by ATpoint 85k

Login before adding your answer.