How did Garrison et al. simulate the sequence reads used to evaluate vg in their Nature Biotechnology paper?

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4.2 years ago

ac2278 ▴ 20

Could someone explain how Garrison et al. simulated the sequence reads used to evaluate vg in their paper?

Maybe I'm missing something obvious, but I don't see the details outlined in the paper or supplementary materials.

vg • 1.7k views

ADD COMMENT • link updated 4.1 years ago by Biostar 20 • written 4.2 years ago by ac2278 ▴ 20

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If it's not in the paper (make sure to check supplementary materials) then ask the authors.

ADD REPLY • link 4.2 years ago by Jean-Karim Heriche 27k

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I didn't see it in the supplementary materials. I emailed the corresponding author a few days ago and haven't received a reply. It's odd that I can't find a more detailed description of how the reads were generated in the paper or supporting documents. I must be missing something obvious and was hoping the members of this forum could point me in the right direction.

ADD REPLY • link 4.2 years ago by ac2278 ▴ 20

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You're probably not missing anything. I'd recommend waiting a few more days for a response.