annovar continues to use hg18 version despite using buildver hg19 argument

Question

[Dhara Awasthi]

Hey, I am using ANNOVAR. I downloaded the required databases and entered the following command : $ perl table_annovar.pl <ceu.low_coverage.2010_10.indel.sites.vcf> --outfile final –buildverhg19 --protocol cytoBand,1000g2014oct_eur,1000g2014oct_afr,exac03,ljb26_all,clinvar_20140929,snp138 --operation r,f,f,f,f,f,f --vcfinput

I get the following ERROR despite including the buildverhg19 argument.

NOTICE: the --buildver argument is set as 'hg18' by default NOTICE: the --polish argument is set ON automatically (use --nopolish to change this behavior) Error: the required database file –buildverhg19/hg18_cytoBand.txt does not exist.

I don't know why it is still using hg18 version.. Please help!!!!

[brunobsouzaa]

Please, use the appropriate format text. As I can identify, you just need a space on the -buildver option:

$ perl table_annovar.pl <ceu.low_coverage.2010_10.indel.sites.vcf> --outfile final –buildver hg19 --protocol cytoBand,1000g2014oct_eur,1000g2014oct_afr,exac03,ljb26_all,clinvar_20140929,snp138 --operation r,f,f,f,f,f,f --vcfinput