How to get a list of genes from a list of SNPs

Question

[Nuthatch]

I have a snp_list.txt file, which contains 49.663 lines, one for each SNP typed by a canine SNP-chip. The file includes 6 columns for each line, and looks like this:

ProbeId Chr Pos BroadID Allele1 Allele2
chr1.3398480    1   3398480 BICF2P391650    C   T
chr1.3453895    1   3453895 BICF2G630707948 C   T
chr1.3573121    1   3573121 BICF2P1282632   G   T
chr1.3691446    1   3691446 BICF2G630708020 C   T
chr1.3699781    1   3699781 BICF2G630708023 A   C
chr1.3713883    1   3713883 BICF2G630708027 G   T

Now, what I'd like to know is if there is a way to get the list of canine genes in which these SNPs are included, based on the informations present in the snp_list.txt file.

[ATpoint]

Convert the list into a BED file and then intersect it with a BED or GTF containing the genes. You can use bedtools intersect for this. Please try out something, and then come back if you get stuck.