Anybody knows any stand alone tool/pipeline for Bacterial Gene Ontology (GO) analysis?

Question

[Kumar]

I have annotated amino acid sequences of various strains of particular bacterial species. I would like to carry out Gene Ontology analysis for the same. Therefore, could you please suggest me any standalone GO analysis tool/pipeline?

Thanks in advance.

[Ram]

Hello Dineshkumar K!

It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/14504/which-stand-alone-tool-pipeline-to-be-used-for-bacterial-go-analysis

This is typically not recommended as it runs the risk of annoying people in both communities.

[Kumar]

I regret for the same and I have deleted the cross-post from the concerned community. Thank you for your valuable suggestion.

Answer 1

[andres.firrincieli]

Hi Dinesh,

to assign GO classifications you can use eggNOG or InterProScan

Answer 2

[shelkmike]

If you mean a GO enrichment analysis, I recommend GOAtools (https://github.com/tanghaibao/goatools)